Publications (without preprints)
                论文发表(不含预印本)
            
            
                
                    View full publication list (including preprints) on Google Scholar在Google Scholar查看完整论文列表(包括预印本)
                
            
            
            
                2025
                2025年
            
            
                An evaluation framework for clinical use of large language models in patient interaction tasks
                Shreya Johri, Jaehwan Jeong, Benjamin A Tran, Daniel I Schlessinger, Shannon Wongvibulsin, Leandra A Barnes, Hong-Yu Zhou, Zhuo Ran Cai, Eliezer M Van Allen, David Kim, Roxana Daneshjou, Pranav Rajpurkar
                Nature Medicine, 2025
             
            
                Self-improving generative foundation model for synthetic medical image generation and clinical applications
                Jinzhuo Wang, Kai Wang, Yunfang Yu, Yuxing Lu, Wenchao Xiao, Zhuo Sun, Fei Liu, Zixing Zou, Yuanxu Gao, Lei Yang, Hong-Yu Zhou, Hanpei Miao, Wenting Zhao, Lisha Huang, Lingchao Zeng, Rui Guo, Ieng Chong, Boyu Deng, Linling Cheng, Xiaoniao Chen, Jing Luo, Meng-Hua Zhu, Daniel Baptista-Hon, Olivia Monteiro, Ming Li, Yu Ke, Jiahui Li, Simiao Zeng, Taihua Guan, Jin Zeng, Kanmin Xue, Eric Oermann, Huiyan Luo, Yun Yin, Kang Zhang, Jia Qu
                Nature Medicine, 2025
             
            
                MetaGP: A Generative Foundation Model Integrating Electronic Health Records and Multimodal Imaging for Addressing Unmet Clinical Needs
                
                    Fei Liu, Hong-Yu Zhou, Kai Wang, Yunfang Yu, Yuanxu Gao, Zhuo Sun, Sian Liu, Shanshan Sun, Zixing Zou, Zhuomin Li, Bingzhou Li, Hanpei Miao, Yang Liu, Taiwa Hou, Manson Fok, Nivritti Gajanan Patil, Kanmin Xue, Ting Li, Eric Oermann, Yun Yin, Lian Duan, Jia Qu, Xiaoying Huang, Shengwei Jin, Kang Zhang
                Cell Reports Medicine, 2025
             
            
                Multimodal Generative AI for Interpreting 3D Medical Images and Videos
                Jung-Oh Lee, Hong-Yu Zhou, Tyler M Berzin, Daniel K Sodickson, Pranav Rajpurkar
                npj Digital Medicine, 2025
             
            
                BenchReAD: A Systematic Benchmark for Retinal Anomaly Detection
                Chenyu Lian, Hong-Yu Zhou, Zhanli Hu, Jing Qin
                International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2025
             
            
                Efficient Medical Vision-Language Alignment Through Adapting Masked Vision Models
                Chenyu Lian, Hong-Yu Zhou, Dongyun Liang, Jing Qin, Liansheng Wang
                IEEE Transactions on Medical Imaging, 2025
             
            
                Multi-Modal Longitudinal Representation Learning for Predicting Neoadjuvant Therapy Response in Breast Cancer Treatment
                Yuan Gao, Tao Tan, Xin Wang, Regina Beets-Tan, Tianyu Zhang, Luyi Han, Antonio Portaluri, Chunyao Lu, Xinglong Liang, Jonas Teuwen, Hong-Yu Zhou, Ritse Mann
                IEEE Journal of Biomedical and Health Informatics, 2025
             
            
            
                TransXNet: Learning Both Global and Local Dynamics with a Dual Dynamic Token Mixer for Visual Recognition
                Meng Lou, Shu Zhang, Hong-Yu Zhou, Sibei Yang, Chuan Wu, Yizhou Yu
                IEEE Transactions on Neural Networks and Learning Systems, 2025
             
            
                SDR-Former: A Siamese Dual-Resolution Transformer for Liver Lesion Classification Using 3D Multi-Phase Imaging
                Meng Lou, Hanning Ying, Xiaoqing Liu, Hong-Yu Zhou, Yuqin Zhang, Yizhou Yu
                Neural Networks, 2025
             
            
                MedTrinity-25M: A Large-Scale Multimodal Dataset with Multigranular Annotations for Medicine
                Yunfei Xie, Ce Zhou, Lang Gao, Juncheng Wu, Xianhang Li, Hong-Yu Zhou, Sheng Liu, Lei Xing, James Zou, Cihang Xie, Yuyin Zhou
                International Conference on Learning Representations (ICLR), 2025
             
            
            
                2024
                2024年
            
            
                Enhancing Representation in Radiography-Reports Foundation Model: A Granular Alignment Algorithm Using Masked Contrastive Learning
                Weijian Huang, Cheng Li, Hong-Yu Zhou, Hao Yang, Jiarun Liu, Yong Liang, Hairong Zheng, Shaoting Zhang, Shanshan Wang
                Nature Communications, 2024
             
            
                An Explainable Longitudinal Multi-Modal Fusion Model for Predicting Neoadjuvant Therapy Response in Women with Breast Cancer
                Yuan Gao, Sofia Ventura-Diaz, Xin Wang, Muzhen He, Zeyan Xu, Arlene Weir, Hong-Yu Zhou, Tianyu Zhang, Frederieke H van Duijnhoven, Luyi Han, Xiaomei Li, Anna D’Angelo, Valentina Longo, Zaiyi Liu, Jonas Teuwen, Marleen Kok, Regina Beets-Tan, Hugo M Horlings, Tao Tan, Ritse Mann
                Nature Communications, 2024
             
            
                Concepts and Applications of Digital Twins in Healthcare and Medicine
                Kang Zhang, Hong-Yu Zhou, Daniel T Baptista-Hon, Yuanxu Gao, Xiaohong Liu, Eric Oermann, Sheng Xu, Shengwei Jin, Jian Zhang, Zhuo Sun, Yun Yin, Ronald M Razmi, Alexandre Loupy, Stephan Beck, Jia Qu, Joseph Wu
                Patterns, 2024
             
            
            
                A Survey on Graph Neural Networks and Graph Transformers in Computer Vision: A Task-Oriented Perspective
                Chaoqi Chen, Yushuang Wu, Qiyuan Dai, Hong-Yu Zhou, Mutian Xu, Sibei Yang, Xiaoguang Han, Yizhou Yu
                IEEE Transactions on Pattern Analysis and Machine Intelligence, 2024
             
            
                Swin-UMamba†: Adapting Mamba-Based Vision Foundation Models for Medical Image Segmentation
                Jiarun Liu, Hao Yang, Hong-Yu Zhou, Lequan Yu, Yong Liang, Yizhou Yu, Shaoting Zhang, Hairong Zheng, Shanshan Wang
                IEEE Transactions on Medical Imaging, 2024
             
            
                Swin-UMamba: Mamba-Based UNet with ImageNet-Based Pretraining
                Jiarun Liu, Hao Yang, Hong-Yu Zhou, Yan Xi, Lequan Yu, Yizhou Yu, Yong Liang, Guangming Shi, Shaoting Zhang, Hairong Zheng, Shanshan Wang
                International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2024
             
            
                Cross-Dimensional Medical Self-Supervised Representation Learning Based on a Pseudo-3D Transformation
                Fei Gao, Siwen Wang, Churan Wang, Fandong Zhang, Hong-Yu Zhou, Yizhou Wang, Gang Yu, Yizhou Yu
                International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2024
             
            
                Improving Neoadjuvant Therapy Response Prediction by Integrating Longitudinal Mammogram Generation with Cross-Modal Radiological Reports: A Vision-Language Alignment-Guided Model
                Yuan Gao, Hong-Yu Zhou, Xin Wang, Tianyu Zhang, Luyi Han, Chunyao Lu, Xinglong Liang, Jonas Teuwen, Regina Beets-Tan, Tao Tan
                International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2024
             
            
                Multimodal Self-Supervised Learning for Lesion Localization
                Hao Yang, Hong-Yu Zhou, Cheng Li, Weijian Huang, Jiarun Liu, Yong Liang, Guangming Shi, Hairong Zheng, Qiegen Liu, Shanshan Wang
                IEEE International Symposium on Biomedical Imaging (ISBI), 2024
             
            
                MLIP: Medical Language-Image Pre-Training with Masked Local Representation Learning
                Jiarun Liu, Hong-Yu Zhou, Cheng Li, Weijian Huang, Hao Yang, Yong Liang, Guangming Shi, Hairong Zheng, Shanshan Wang
                IEEE International Symposium on Biomedical Imaging (ISBI), 2024
             
            
                Enhancing Representation in Medical Vision-Language Foundation Models via Multi-Scale Information Extraction Techniques
                Weijian Huang, Cheng Li, Hong-Yu Zhou, Jiarun Liu, Hao Yang, Yong Liang, Guangming Shi, Hairong Zheng, Shanshan Wang
                IEEE International Symposium on Biomedical Imaging (ISBI), 2024
             
            
            
                2023
                2023年
            
            
            
                A Transformer-Based Representation-Learning Model with Unified Processing of Multimodal Input for Clinical Diagnostics
                Hong-Yu Zhou, Yizhou Yu, Chengdi Wang, Shu Zhang, Yuanxu Gao, Jia Pan, Jun Shao, Guangming Lu, Kang Zhang, Weimin Li
                Nature Biomedical Engineering, 2023
             
            
                A Unified Visual Information Preservation Framework for Self-Supervised Pre-Training in Medical Image Analysis
                Hong-Yu Zhou, Chixiang Lu, Chaoqi Chen, Sibei Yang, Yizhou Yu
                IEEE Transactions on Pattern Analysis and Machine Intelligence, 2023
             
            
                nnFormer: Volumetric Medical Image Segmentation via a 3D Transformer
                Hong-Yu Zhou, Jiansen Guo, Yinghao Zhang, Xiaoguang Han, Lequan Yu, Liansheng Wang, Yizhou Yu
                IEEE Transactions on Image Processing, 2023
             
            
                Protein Representation Learning via Knowledge Enhanced Primary Structure Modeling
                Hong-Yu Zhou, Yunxiang Fu, Zhicheng Bian, Cheng Bian, Yizhou Yu
                International Conference on Learning Representations (ICLR), 2023
             
            
                Advancing Radiograph Representation Learning with Masked Record Modeling
                Hong-Yu Zhou, Chenyu Lian, Liansheng Wang, Yizhou Yu
                International Conference on Learning Representations (ICLR), 2023
             
            
                Activate and Reject: Towards Safe Domain Generalization Under Category Shift
                Chaoqi Chen, Luyao Tang, Leitian Tao, Hong-Yu Zhou, Yue Huang, Xiaoguang Han, Yizhou Yu
                Proceedings of the IEEE/CVF International Conference on Computer Vision, 2023
             
            
                DDCoT: Duty-Distinct Chain-of-Thought Prompting for Multimodal Reasoning in Language Models
                Ge Zheng, Bin Yang, Jiajin Tang, Hong-Yu Zhou, Sibei Yang
                Advances in Neural Information Processing Systems, 2023
             
            
                Advancing 3D Medical Image Analysis with Variable Dimension Transform Based Supervised 3D Pre-Training
                Shu Zhang, Zihao Li, Hong-Yu Zhou, Jiechao Ma, Yizhou Yu
                Neurocomputing, 2023
             
            
            
                2022
                2022年
            
            
            
                Generalized Radiograph Representation Learning via Cross-Supervision Between Images and Free-Text Radiology Reports
                Hong-Yu Zhou, Xiaoyu Chen, Yinghao Zhang, Ruibang Luo, Liansheng Wang, Yizhou Yu
                Nature Machine Intelligence, 2022
             
            
                GraVIS: Grouping Augmented Views From Independent Sources for Dermatology Analysis
                Hong-Yu Zhou, Chixiang Lu, Liansheng Wang, Yizhou Yu
                IEEE Transactions on Medical Imaging, 2022
             
            
                MASS: Modality-Collaborative Semi-Supervised Segmentation by Exploiting Cross-Modal Consistency from Unpaired CT and MRI Images
                Xiaoyu Chen, Hong-Yu Zhou, Feng Liu, Jiansen Guo, Liansheng Wang, Yizhou Yu
                Medical Image Analysis, 2022
             
            
                Relation Matters: Foreground-Aware Graph-Based Relational Reasoning for Domain Adaptive Object Detection
                Chaoqi Chen, Jiongcheng Li, Hong-Yu Zhou, Xiaoguang Han, Yue Huang, Xinghao Ding, Yizhou Yu
                IEEE Transactions on Pattern Analysis and Machine Intelligence, 2022
             
            
                Attribute Surrogates Learning and Spectral Tokens Pooling in Transformers for Few-Shot Learning
                Yangji He, Weihan Liang, Dongyang Zhao, Hong-Yu Zhou, Weifeng Ge, Yizhou Yu, Wenqiang Zhang
                Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2022
             
            
                Development and Validation of an Abnormality-Derived Deep-Learning Diagnostic System for Major Respiratory Diseases
                Chengdi Wang, Jiechao Ma, Shu Zhang, Jun Shao, Yanyan Wang, Hong-Yu Zhou, Lujia Song, Jie Zheng, Yizhou Yu, Weimin Li
                NPJ Digital Medicine, 2022
             
            
                ProCo: Prototype-Aware Contrastive Learning for Long-Tailed Medical Image Classification
                Zhixiong Yang, Junwen Pan, Yanzhan Yang, Xiaozhou Shi, Hong-Yu Zhou, Zhicheng Bian, Cheng Bian
                International Conference on Medical Image Computing and Computer-Assisted Intervention, 2022
             
            
                UNet-2022: Exploring Dynamics in Non-Isomorphic Architecture
                Jiansen Guo, Hong-Yu Zhou, Liansheng Wang, Yizhou Yu
                International Conference on Medical Imaging and Computer-Aided Diagnosis, 2022
             
            
                Augmented Multi-Component Recurrent Graph Convolutional Network for Traffic Flow Forecasting
                Chi Zhang, Hong-Yu Zhou, Qiang Qiu, Zhichun Jian, Daoye Zhu, Chengqi Cheng, Liesong He, Guoping Liu, Xiang Wen, Runbo Hu
                ISPRS International Journal of Geo-Information, 2022
             
            
            
                2021
                2021年
            
            
                Preservational Learning Improves Self-Supervised Medical Image Models by Reconstructing Diverse Contexts
                Hong-Yu Zhou, Chixiang Lu, Sibei Yang, Xiaoguang Han, Yizhou Yu
                Proceedings of the IEEE/CVF International Conference on Computer Vision, 2021
             
            
                Generalized Organ Segmentation by Imitating One-Shot Reasoning Using Anatomical Correlation
                Hong-Yu Zhou, Hualuo Liu, Shilei Cao, Dong Wei, Chixiang Lu, Yizhou Yu, Kai Ma, Yefeng Zheng
                International Conference on Information Processing in Medical Imaging, 2021
             
            
                SSMD: Semi-Supervised Medical Image Detection with Adaptive Consistency and Heterogeneous Perturbation
                Hong-Yu Zhou, Chengdi Wang, Haofeng Li, Gang Wang, Shu Zhang, Weimin Li, Yizhou Yu
                Medical Image Analysis, 2021
             
            
                ConvNets vs. Transformers: Whose Visual Representations Are More Transferable?
                Hong-Yu Zhou, Chixiang Lu, Sibei Yang, Yizhou Yu
                Proceedings of the IEEE/CVF International Conference on Computer Vision, 2021
             
            
                Bottom-Up Shift and Reasoning for Referring Image Segmentation
                Sibi Yang, Meng Xia, Guanbin Li, Hong-Yu Zhou, Yizhou Yu
                Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2021
             
            
                Learning to Discover Multi-Class Attentional Regions for Multi-Label Image Recognition
                Bin-Bin Gao, Hong-Yu Zhou
                IEEE Transactions on Image Processing, 2021
             
            
                Recist-Net: Lesion Detection via Grouping Keypoints on Recist-Based Annotation
                Cong Xie, Shilei Cao, Dong Wei, Hong-Yu Zhou, Kai Ma, Xianli Zhang, Buyue Qian, Liansheng Wang, Yefeng Zheng
                2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI), 2021
             
            
                Evaluation and Comparison of Accurate Automated Spinal Curvature Estimation Algorithms with Spinal Anterior-Posterior X-Ray Images: The AASCE2019 Challenge
                Liansheng Wang, Cong Xie, Yi Lin, Hong-Yu Zhou, Kailin Chen, Dalong Cheng, Florian Dubost, Benjamin Collery, Bidur Khanal, Bishesh Khanal
                Medical Image Analysis, 2021
             
            
            
                2020
                2020年
            
            
            
                Comparing to Learn: Surpassing ImageNet Pretraining on Radiographs by Comparing Image Representations
                Hong-Yu Zhou, Shuang Yu, Cheng Bian, Yifan Hu, Kai Ma, Yefeng Zheng
                International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2020
             
            
                Difficulty-Aware Glaucoma Classification with Multi-Rater Consensus Modeling
                Shuang Yu, Hong-Yu Zhou, Kai Ma, Cheng Bian, Chunyan Chu, Hanruo Liu, Yefeng Zheng
                International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2020
             
            
                A Macro-Micro Weakly-Supervised Framework for AS-OCT Tissue Segmentation
                Munan Bian, Cheng Bian, Donghuan Lu, Hong-Yu Zhou, Shuang Yu, Chenglang Yuan, Yang Guo, Yaohua Wang, Kai Ma, Yefeng Zheng
                International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2020
             
            
                Efficient and Effective Training of COVID-19 Classification Networks with Self-Supervised Dual-Track Learning to Rank
                Yuexiang Li, Dong Wei, Jiawei Chen, Shilei Cao, Hong-Yu Zhou, Yanchun Zhu, Jianrong Wu, Lan Lan, Wenbo Sun, Tianyi Qian
                IEEE Journal of Biomedical and Health Informatics, 2020
             
            
            
                2019
                2019年
            
            
            
                Seg4Reg Networks for Automated Spinal Curvature Estimation
                Yi Lin, Hong-Yu Zhou, Kai Ma, Xin Yang, Yefeng Zheng
                International Workshop and Challenge on Computational Methods and Clinical Applications for Spine Imaging, 2020
             
            
                CodeAttention: Translating Source Code to Comments by Exploiting the Code Constructs
                Wenhao Zheng, Hong-Yu Zhou, Ming Li, Jianxin Wu
                Frontiers of Computer Science, 2019
             
            
            
                2018
                2018年
            
            
            
                ThiNet: Pruning CNN Filters for a Thinner Net
                Jian-Hao Luo, Hao Zhang, Hong-Yu Zhou, Chen-Wei Xie, Jianxin Wu, Weiyao Lin
                IEEE Transactions on Pattern Analysis and Machine Intelligence, 2018
             
            
                Age Estimation Using Expectation of Label Distribution Learning
                Bin-Bin Gao, Hong-Yu Zhou, Jianxin Wu, Xin Geng
                International Joint Conference on Artificial Intelligence (IJCAI), 2018
             
            
            
                2017
                2017年
            
            
            
                Adaptive Feeding: Achieving Fast and Accurate Detections by Adaptively Combining Object Detectors
                Hong-Yu Zhou, Bin-Bin Gao, Jianxin Wu
                Proceedings of the IEEE International Conference on Computer Vision, 2017