Publications (without preprints)
论文发表(不含预印本)
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2025
2025年
An evaluation framework for clinical use of large language models in patient interaction tasks
Shreya Johri, Jaehwan Jeong, Benjamin A Tran, Daniel I Schlessinger, Shannon Wongvibulsin, Leandra A Barnes, Hong-Yu Zhou, Zhuo Ran Cai, Eliezer M Van Allen, David Kim, Roxana Daneshjou, Pranav Rajpurkar
Nature Medicine, 2025
Self-improving generative foundation model for synthetic medical image generation and clinical applications
Jinzhuo Wang, Kai Wang, Yunfang Yu, Yuxing Lu, Wenchao Xiao, Zhuo Sun, Fei Liu, Zixing Zou, Yuanxu Gao, Lei Yang, Hong-Yu Zhou, Hanpei Miao, Wenting Zhao, Lisha Huang, Lingchao Zeng, Rui Guo, Ieng Chong, Boyu Deng, Linling Cheng, Xiaoniao Chen, Jing Luo, Meng-Hua Zhu, Daniel Baptista-Hon, Olivia Monteiro, Ming Li, Yu Ke, Jiahui Li, Simiao Zeng, Taihua Guan, Jin Zeng, Kanmin Xue, Eric Oermann, Huiyan Luo, Yun Yin, Kang Zhang, Jia Qu
Nature Medicine, 2025
MetaGP: A Generative Foundation Model Integrating Electronic Health Records and Multimodal Imaging for Addressing Unmet Clinical Needs
Fei Liu, Hong-Yu Zhou, Kai Wang, Yunfang Yu, Yuanxu Gao, Zhuo Sun, Sian Liu, Shanshan Sun, Zixing Zou, Zhuomin Li, Bingzhou Li, Hanpei Miao, Yang Liu, Taiwa Hou, Manson Fok, Nivritti Gajanan Patil, Kanmin Xue, Ting Li, Eric Oermann, Yun Yin, Lian Duan, Jia Qu, Xiaoying Huang, Shengwei Jin, Kang Zhang
Cell Reports Medicine, 2025
Multimodal Generative AI for Interpreting 3D Medical Images and Videos
Jung-Oh Lee, Hong-Yu Zhou, Tyler M Berzin, Daniel K Sodickson, Pranav Rajpurkar
npj Digital Medicine, 2025
BenchReAD: A Systematic Benchmark for Retinal Anomaly Detection
Chenyu Lian, Hong-Yu Zhou, Zhanli Hu, Jing Qin
International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2025
Efficient Medical Vision-Language Alignment Through Adapting Masked Vision Models
Chenyu Lian, Hong-Yu Zhou, Dongyun Liang, Jing Qin, Liansheng Wang
IEEE Transactions on Medical Imaging, 2025
Multi-Modal Longitudinal Representation Learning for Predicting Neoadjuvant Therapy Response in Breast Cancer Treatment
Yuan Gao, Tao Tan, Xin Wang, Regina Beets-Tan, Tianyu Zhang, Luyi Han, Antonio Portaluri, Chunyao Lu, Xinglong Liang, Jonas Teuwen, Hong-Yu Zhou, Ritse Mann
IEEE Journal of Biomedical and Health Informatics, 2025
TransXNet: Learning Both Global and Local Dynamics with a Dual Dynamic Token Mixer for Visual Recognition
Meng Lou, Shu Zhang, Hong-Yu Zhou, Sibei Yang, Chuan Wu, Yizhou Yu
IEEE Transactions on Neural Networks and Learning Systems, 2025
SDR-Former: A Siamese Dual-Resolution Transformer for Liver Lesion Classification Using 3D Multi-Phase Imaging
Meng Lou, Hanning Ying, Xiaoqing Liu, Hong-Yu Zhou, Yuqin Zhang, Yizhou Yu
Neural Networks, 2025
MedTrinity-25M: A Large-Scale Multimodal Dataset with Multigranular Annotations for Medicine
Yunfei Xie, Ce Zhou, Lang Gao, Juncheng Wu, Xianhang Li, Hong-Yu Zhou, Sheng Liu, Lei Xing, James Zou, Cihang Xie, Yuyin Zhou
International Conference on Learning Representations (ICLR), 2025
2024
2024年
Enhancing Representation in Radiography-Reports Foundation Model: A Granular Alignment Algorithm Using Masked Contrastive Learning
Weijian Huang, Cheng Li, Hong-Yu Zhou, Hao Yang, Jiarun Liu, Yong Liang, Hairong Zheng, Shaoting Zhang, Shanshan Wang
Nature Communications, 2024
An Explainable Longitudinal Multi-Modal Fusion Model for Predicting Neoadjuvant Therapy Response in Women with Breast Cancer
Yuan Gao, Sofia Ventura-Diaz, Xin Wang, Muzhen He, Zeyan Xu, Arlene Weir, Hong-Yu Zhou, Tianyu Zhang, Frederieke H van Duijnhoven, Luyi Han, Xiaomei Li, Anna D’Angelo, Valentina Longo, Zaiyi Liu, Jonas Teuwen, Marleen Kok, Regina Beets-Tan, Hugo M Horlings, Tao Tan, Ritse Mann
Nature Communications, 2024
Concepts and Applications of Digital Twins in Healthcare and Medicine
Kang Zhang, Hong-Yu Zhou, Daniel T Baptista-Hon, Yuanxu Gao, Xiaohong Liu, Eric Oermann, Sheng Xu, Shengwei Jin, Jian Zhang, Zhuo Sun, Yun Yin, Ronald M Razmi, Alexandre Loupy, Stephan Beck, Jia Qu, Joseph Wu
Patterns, 2024
A Survey on Graph Neural Networks and Graph Transformers in Computer Vision: A Task-Oriented Perspective
Chaoqi Chen, Yushuang Wu, Qiyuan Dai, Hong-Yu Zhou, Mutian Xu, Sibei Yang, Xiaoguang Han, Yizhou Yu
IEEE Transactions on Pattern Analysis and Machine Intelligence, 2024
Swin-UMamba†: Adapting Mamba-Based Vision Foundation Models for Medical Image Segmentation
Jiarun Liu, Hao Yang, Hong-Yu Zhou, Lequan Yu, Yong Liang, Yizhou Yu, Shaoting Zhang, Hairong Zheng, Shanshan Wang
IEEE Transactions on Medical Imaging, 2024
Swin-UMamba: Mamba-Based UNet with ImageNet-Based Pretraining
Jiarun Liu, Hao Yang, Hong-Yu Zhou, Yan Xi, Lequan Yu, Yizhou Yu, Yong Liang, Guangming Shi, Shaoting Zhang, Hairong Zheng, Shanshan Wang
International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2024
Cross-Dimensional Medical Self-Supervised Representation Learning Based on a Pseudo-3D Transformation
Fei Gao, Siwen Wang, Churan Wang, Fandong Zhang, Hong-Yu Zhou, Yizhou Wang, Gang Yu, Yizhou Yu
International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2024
Improving Neoadjuvant Therapy Response Prediction by Integrating Longitudinal Mammogram Generation with Cross-Modal Radiological Reports: A Vision-Language Alignment-Guided Model
Yuan Gao, Hong-Yu Zhou, Xin Wang, Tianyu Zhang, Luyi Han, Chunyao Lu, Xinglong Liang, Jonas Teuwen, Regina Beets-Tan, Tao Tan
International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2024
Multimodal Self-Supervised Learning for Lesion Localization
Hao Yang, Hong-Yu Zhou, Cheng Li, Weijian Huang, Jiarun Liu, Yong Liang, Guangming Shi, Hairong Zheng, Qiegen Liu, Shanshan Wang
IEEE International Symposium on Biomedical Imaging (ISBI), 2024
MLIP: Medical Language-Image Pre-Training with Masked Local Representation Learning
Jiarun Liu, Hong-Yu Zhou, Cheng Li, Weijian Huang, Hao Yang, Yong Liang, Guangming Shi, Hairong Zheng, Shanshan Wang
IEEE International Symposium on Biomedical Imaging (ISBI), 2024
Enhancing Representation in Medical Vision-Language Foundation Models via Multi-Scale Information Extraction Techniques
Weijian Huang, Cheng Li, Hong-Yu Zhou, Jiarun Liu, Hao Yang, Yong Liang, Guangming Shi, Hairong Zheng, Shanshan Wang
IEEE International Symposium on Biomedical Imaging (ISBI), 2024
2023
2023年
A Transformer-Based Representation-Learning Model with Unified Processing of Multimodal Input for Clinical Diagnostics
Hong-Yu Zhou, Yizhou Yu, Chengdi Wang, Shu Zhang, Yuanxu Gao, Jia Pan, Jun Shao, Guangming Lu, Kang Zhang, Weimin Li
Nature Biomedical Engineering, 2023
A Unified Visual Information Preservation Framework for Self-Supervised Pre-Training in Medical Image Analysis
Hong-Yu Zhou, Chixiang Lu, Chaoqi Chen, Sibei Yang, Yizhou Yu
IEEE Transactions on Pattern Analysis and Machine Intelligence, 2023
nnFormer: Volumetric Medical Image Segmentation via a 3D Transformer
Hong-Yu Zhou, Jiansen Guo, Yinghao Zhang, Xiaoguang Han, Lequan Yu, Liansheng Wang, Yizhou Yu
IEEE Transactions on Image Processing, 2023
Protein Representation Learning via Knowledge Enhanced Primary Structure Modeling
Hong-Yu Zhou, Yunxiang Fu, Zhicheng Bian, Cheng Bian, Yizhou Yu
International Conference on Learning Representations (ICLR), 2023
Advancing Radiograph Representation Learning with Masked Record Modeling
Hong-Yu Zhou, Chenyu Lian, Liansheng Wang, Yizhou Yu
International Conference on Learning Representations (ICLR), 2023
Activate and Reject: Towards Safe Domain Generalization Under Category Shift
Chaoqi Chen, Luyao Tang, Leitian Tao, Hong-Yu Zhou, Yue Huang, Xiaoguang Han, Yizhou Yu
Proceedings of the IEEE/CVF International Conference on Computer Vision, 2023
DDCoT: Duty-Distinct Chain-of-Thought Prompting for Multimodal Reasoning in Language Models
Ge Zheng, Bin Yang, Jiajin Tang, Hong-Yu Zhou, Sibei Yang
Advances in Neural Information Processing Systems, 2023
Advancing 3D Medical Image Analysis with Variable Dimension Transform Based Supervised 3D Pre-Training
Shu Zhang, Zihao Li, Hong-Yu Zhou, Jiechao Ma, Yizhou Yu
Neurocomputing, 2023
2022
2022年
Generalized Radiograph Representation Learning via Cross-Supervision Between Images and Free-Text Radiology Reports
Hong-Yu Zhou, Xiaoyu Chen, Yinghao Zhang, Ruibang Luo, Liansheng Wang, Yizhou Yu
Nature Machine Intelligence, 2022
GraVIS: Grouping Augmented Views From Independent Sources for Dermatology Analysis
Hong-Yu Zhou, Chixiang Lu, Liansheng Wang, Yizhou Yu
IEEE Transactions on Medical Imaging, 2022
MASS: Modality-Collaborative Semi-Supervised Segmentation by Exploiting Cross-Modal Consistency from Unpaired CT and MRI Images
Xiaoyu Chen, Hong-Yu Zhou, Feng Liu, Jiansen Guo, Liansheng Wang, Yizhou Yu
Medical Image Analysis, 2022
Relation Matters: Foreground-Aware Graph-Based Relational Reasoning for Domain Adaptive Object Detection
Chaoqi Chen, Jiongcheng Li, Hong-Yu Zhou, Xiaoguang Han, Yue Huang, Xinghao Ding, Yizhou Yu
IEEE Transactions on Pattern Analysis and Machine Intelligence, 2022
Attribute Surrogates Learning and Spectral Tokens Pooling in Transformers for Few-Shot Learning
Yangji He, Weihan Liang, Dongyang Zhao, Hong-Yu Zhou, Weifeng Ge, Yizhou Yu, Wenqiang Zhang
Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2022
Development and Validation of an Abnormality-Derived Deep-Learning Diagnostic System for Major Respiratory Diseases
Chengdi Wang, Jiechao Ma, Shu Zhang, Jun Shao, Yanyan Wang, Hong-Yu Zhou, Lujia Song, Jie Zheng, Yizhou Yu, Weimin Li
NPJ Digital Medicine, 2022
ProCo: Prototype-Aware Contrastive Learning for Long-Tailed Medical Image Classification
Zhixiong Yang, Junwen Pan, Yanzhan Yang, Xiaozhou Shi, Hong-Yu Zhou, Zhicheng Bian, Cheng Bian
International Conference on Medical Image Computing and Computer-Assisted Intervention, 2022
UNet-2022: Exploring Dynamics in Non-Isomorphic Architecture
Jiansen Guo, Hong-Yu Zhou, Liansheng Wang, Yizhou Yu
International Conference on Medical Imaging and Computer-Aided Diagnosis, 2022
Augmented Multi-Component Recurrent Graph Convolutional Network for Traffic Flow Forecasting
Chi Zhang, Hong-Yu Zhou, Qiang Qiu, Zhichun Jian, Daoye Zhu, Chengqi Cheng, Liesong He, Guoping Liu, Xiang Wen, Runbo Hu
ISPRS International Journal of Geo-Information, 2022
2021
2021年
Preservational Learning Improves Self-Supervised Medical Image Models by Reconstructing Diverse Contexts
Hong-Yu Zhou, Chixiang Lu, Sibei Yang, Xiaoguang Han, Yizhou Yu
Proceedings of the IEEE/CVF International Conference on Computer Vision, 2021
Generalized Organ Segmentation by Imitating One-Shot Reasoning Using Anatomical Correlation
Hong-Yu Zhou, Hualuo Liu, Shilei Cao, Dong Wei, Chixiang Lu, Yizhou Yu, Kai Ma, Yefeng Zheng
International Conference on Information Processing in Medical Imaging, 2021
SSMD: Semi-Supervised Medical Image Detection with Adaptive Consistency and Heterogeneous Perturbation
Hong-Yu Zhou, Chengdi Wang, Haofeng Li, Gang Wang, Shu Zhang, Weimin Li, Yizhou Yu
Medical Image Analysis, 2021
ConvNets vs. Transformers: Whose Visual Representations Are More Transferable?
Hong-Yu Zhou, Chixiang Lu, Sibei Yang, Yizhou Yu
Proceedings of the IEEE/CVF International Conference on Computer Vision, 2021
Bottom-Up Shift and Reasoning for Referring Image Segmentation
Sibi Yang, Meng Xia, Guanbin Li, Hong-Yu Zhou, Yizhou Yu
Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2021
Learning to Discover Multi-Class Attentional Regions for Multi-Label Image Recognition
Bin-Bin Gao, Hong-Yu Zhou
IEEE Transactions on Image Processing, 2021
Recist-Net: Lesion Detection via Grouping Keypoints on Recist-Based Annotation
Cong Xie, Shilei Cao, Dong Wei, Hong-Yu Zhou, Kai Ma, Xianli Zhang, Buyue Qian, Liansheng Wang, Yefeng Zheng
2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI), 2021
Evaluation and Comparison of Accurate Automated Spinal Curvature Estimation Algorithms with Spinal Anterior-Posterior X-Ray Images: The AASCE2019 Challenge
Liansheng Wang, Cong Xie, Yi Lin, Hong-Yu Zhou, Kailin Chen, Dalong Cheng, Florian Dubost, Benjamin Collery, Bidur Khanal, Bishesh Khanal
Medical Image Analysis, 2021
2020
2020年
Comparing to Learn: Surpassing ImageNet Pretraining on Radiographs by Comparing Image Representations
Hong-Yu Zhou, Shuang Yu, Cheng Bian, Yifan Hu, Kai Ma, Yefeng Zheng
International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2020
Difficulty-Aware Glaucoma Classification with Multi-Rater Consensus Modeling
Shuang Yu, Hong-Yu Zhou, Kai Ma, Cheng Bian, Chunyan Chu, Hanruo Liu, Yefeng Zheng
International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2020
A Macro-Micro Weakly-Supervised Framework for AS-OCT Tissue Segmentation
Munan Bian, Cheng Bian, Donghuan Lu, Hong-Yu Zhou, Shuang Yu, Chenglang Yuan, Yang Guo, Yaohua Wang, Kai Ma, Yefeng Zheng
International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2020
Efficient and Effective Training of COVID-19 Classification Networks with Self-Supervised Dual-Track Learning to Rank
Yuexiang Li, Dong Wei, Jiawei Chen, Shilei Cao, Hong-Yu Zhou, Yanchun Zhu, Jianrong Wu, Lan Lan, Wenbo Sun, Tianyi Qian
IEEE Journal of Biomedical and Health Informatics, 2020
2019
2019年
Seg4Reg Networks for Automated Spinal Curvature Estimation
Yi Lin, Hong-Yu Zhou, Kai Ma, Xin Yang, Yefeng Zheng
International Workshop and Challenge on Computational Methods and Clinical Applications for Spine Imaging, 2020
CodeAttention: Translating Source Code to Comments by Exploiting the Code Constructs
Wenhao Zheng, Hong-Yu Zhou, Ming Li, Jianxin Wu
Frontiers of Computer Science, 2019
2018
2018年
ThiNet: Pruning CNN Filters for a Thinner Net
Jian-Hao Luo, Hao Zhang, Hong-Yu Zhou, Chen-Wei Xie, Jianxin Wu, Weiyao Lin
IEEE Transactions on Pattern Analysis and Machine Intelligence, 2018
Age Estimation Using Expectation of Label Distribution Learning
Bin-Bin Gao, Hong-Yu Zhou, Jianxin Wu, Xin Geng
International Joint Conference on Artificial Intelligence (IJCAI), 2018
2017
2017年
Adaptive Feeding: Achieving Fast and Accurate Detections by Adaptively Combining Object Detectors
Hong-Yu Zhou, Bin-Bin Gao, Jianxin Wu
Proceedings of the IEEE International Conference on Computer Vision, 2017